![]() |
Plant Transcription
Factor Database
v4.0
Previous version:
v3.0
|
Home BLAST Prediction RegMap ATRM Download Help About Links |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | GSBRNA2T00116777001 | ||||||||
Common Name | GSBRNA2T00116777001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
||||||||
Family | G2-like | ||||||||
Protein Properties | Length: 385aa MW: 43287 Da PI: 9.594 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 97.9 | 7.1e-31 | 80 | 133 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtpeLH rF++ave+ GG+++AtPk +l+lm+vkgL ++hvkSHLQ+YR+ GSBRNA2T00116777001 80 PRLRWTPELHLRFLQAVEKFGGPDRATPKLVLQLMNVKGLCIAHVKSHLQMYRS 133 8****************************************************7 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.223 | 76 | 136 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.0E-29 | 76 | 134 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.18E-15 | 77 | 135 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.1E-23 | 80 | 135 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 2.8E-10 | 81 | 132 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 385 aa Download sequence Send to blast |
MRSSSQSSEN SKTCPSNNFK ETTKKEDNKD DENKDEEARS VDQIPSNNSY VEESGSHHHN 60 NDQIKKNGGS VRPYNRSKTP RLRWTPELHL RFLQAVEKFG GPDRATPKLV LQLMNVKGLC 120 IAHVKSHLQM YRSKKTDDPN QGNQGFSFEH GAGYTYNLGQ LPMLQSFDQR PSTSLGYDGG 180 SWTDRRRQVY RSPWRGLTAR NSTRTRPTLF SSQSGERFRG VSNSILDDKN KAISFRINSH 240 EAAQASNGVG ESVPSIHRSF LEGPQDHIAT TLSSNQRENP RVAEETENVL KRKRLLLSDD 300 CNKSVQDLDL SLSLKVHRTH NNLGDCLLED EEKKLDDHED IKGLSLSLAS SSSSKLGRDI 360 RKEVQNDTKK RKISVLASPL DLTL* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | GSBRNA2T00116777001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC007020 | 6e-88 | AC007020.5 Arabidopsis thaliana chromosome 2 clone T3G21 map g4514, complete sequence. | |||
GenBank | AF085279 | 6e-88 | AF085279.1 Arabidopsis thaliana ABA-regulated gene cluster, complete sequence. | |||
GenBank | CP002685 | 6e-88 | CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009143232.1 | 0.0 | PREDICTED: uncharacterized protein LOC103866965 isoform X3 | ||||
TrEMBL | A0A078CIE2 | 0.0 | A0A078CIE2_BRANA; BnaA05g05490D protein | ||||
STRING | Bra004973.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM9359 | 21 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G40260.1 | 1e-180 | G2-like family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|